PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023246-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 598aa    MW: 64546.8 Da    PI: 6.9904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023246-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.5e-09404451455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  NNU_023246-RA 404 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKATMLDEIINYVQSLQ 451
                    8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-17398470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-11398455No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17400468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.834400450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6404451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10406456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MEKEKLFMNS GSPPPLSYAA SPSSPPPTWH SSSSGMEVQV GELNCSSEQI PNCYVNLNWE  60
NPMDQNSAFE SALRSMVSSP AASNATVPSD PLALRELIGR LGNMGNSGDI SPSSQTLGGS  120
SVSYTGGNNS TNTSCYSTPL NSPPKLNLSM MDHQIRGNLP ILGNSMPTHP GLASFLADTG  180
FVERAARFSC FGSGSFRGLP GQFRFNENEL PYRPAPRLEN GKLSRVSSSQ SLKAAGSHLG  240
GEENKDPSLQ NGVETELRSA SASALASDRK FRRSPDGEDI ANAQELSPSD QIPGGDSSFK  300
GSNDANARKR KAAPRGKAKE LPLSSPHGKD AKAAAEEDPN AKKCKLADST DNENNSVKEK  360
PEPSGSTKTT MGADQKESKE TQKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM  420
KFLQDLVPGC NKVTGKATML DEIINYVQSL QRQVEFLSMK LATVNPRMDF NMESLLSKDI  480
LQSRASLPHT VYPLDSSAST FPFGQHTRQG LPLQSGISNV TDTHCSANPL DAALRQNIGM  540
QLPPVNGFGE SAPQISTFWE DDLQSVVQMG FGQNQSQTAF HPQNFHGSLP TAHMKIEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243164.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA5AD410.0A5AD41_VITVI; Putative uncharacterized protein
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-72bHLH family protein